ROS1 — Nicotiana attenuata

Summary

A4A49_45693 (ROS1) in coyote tobacco (Nicotiana attenuata) encodes a DNA glycosylase with cytosine C-5 DNA demethylase activity, belonging to the DME/ROS1 family and containing an endonuclease III Fe-S loop motif and HhH base-excision C domain. The gene is associated with chromosomal 5-methylcytosine DNA demethylation via the direct excision pathway, base excision repair, epigenetic regulation of gene expression, pigment accumulation, and anthocyanin anabolism. It is linked to drought tolerance and localizes to the nucleus. Studies of related genes in other species connect the ROS1 family to flavonoid, anthocyanin, and chlorophyll content, as well as plant height and salt tolerance.

Annotations

Chromosome
scaffold00215
Related genes
ROS1
GO terms
DNA Demethylase Activity, DNA glycosylase activity, Chromosomal 5-methylcytosine DNA Demethylation Pathway, Demethylation, Cytosine C-5 DNA Demethylase Activity, Lyase Activity, Epigenetic Regulation Of Gene Expression, Nucleus
Publications
PMID:18089549, PMID:24280374, PMID:19429602, PMID:21896764, PMID:30275307, PMID:22448681, PMID:38756961, PMID:35860677
Traits
flavonoid content, plant height, chlorophyll content, SALTTL (exact), anthocyanin content, drought tolerance