HD1 — Oryza sativa Indica Group

Summary

BGIOSGA006874 (HD1) on chromosome 2 of Indica rice encodes a histone deacetylase (EC 3.5.1.98) with NAD-independent activity, and also carries domains associated with protein kinase activity and chromatin binding. The gene product is linked to histone deacetylase binding, histone demethylase activity, transcription corepressor activity, and structural chromatin roles. It is associated with stress responses including salt and osmotic stress resistance, as well as growth, root development, and seed maturation. The gene has been connected to traits such as panicle number, spikelet fertility, fruit quality, and plant size, and to processes including fruit abscission, floral organ development, and regulation of flowering time. It localizes to HDAC and PRC2 complexes, the chloroplast envelope, and the perinuclear ER membrane. Studies of related genes in other species link the family to abiotic stress tolerance, flowering transition, and reproductive development.

Annotations

Chromosome
2
Related genes
HD1, SCL1, LUG, HIS4, HDA17, HDA9, TPL, AT3G44690
GO terms
Regeneration, Leaf Development, PTGS, Regulation Of Timing Of Transition From Vegetative To Reproductive Phase, downregulation of seed germination, Leaf Morphogenesis, Pollen Development, regulation of ROS metabolic process
Publications
40153710, 37552957, 20387035, 20226671, 21963667, 22476455, 29619039, 30225301
Traits
female germline specification, lateral root branching angle, jasmonate response, herbivore defense, defense response, resistance to Botrytis cinerea, stomatal closure, lignin biosynthesis