HD1 — Oryza sativa Indica Group

Summary

BGIOSGA003030 (HD1) on Indica rice chromosome 1 encodes a protein with histone deacetylase domains and is annotated with histone deacetylase binding, transcription corepressor activity, and structural constituent of chromatin functions. The gene is associated with stress responses including salt and osmotic stress resistance, as well as growth, root development, and seed traits. It has been linked to biological processes such as tubulin deacetylation, negative regulation of seed maturation, fruit abscission, and regulation of multicellular organismal development. Localization evidence places the product in HDAC and PRC2 complexes, condensed chromosomes, and the nucleolus. The gene is also connected to traits including floral organ length, panicle number, spikelet fertility, and metabolite content. Studies of related genes in other species link the family to flowering transition, flower development, seed viability, and abiotic stress tolerance.

Annotations

Chromosome
1
Related genes
HD1, SCL1, LUG, HIS4, HDA17, HDA9, TPL, AT3G44690
GO terms
Regeneration, Leaf Development, PTGS, Regulation Of Timing Of Transition From Vegetative To Reproductive Phase, downregulation of seed germination, Leaf Morphogenesis, Pollen Development, regulation of ROS metabolic process
Publications
40153710, 37552957, 20387035, 20226671, 21963667, 22476455, 29619039, 30225301
Traits
female germline specification, lateral root branching angle, jasmonate response, herbivore defense, defense response, resistance to Botrytis cinerea, stomatal closure, lignin biosynthesis