PCKR1 — Camelina sativa
Summary
CSA06G038730 (PCKR1, CsCYCLOPHILIN) on Camelina sativa chromosome 6 encodes a cyclophilin-type peptidyl-prolyl cis-trans isomerase (PPIase) with cyclosporin A binding and protein binding activities. This gene is associated with protein folding, regulation of protein refolding, mRNA splicing via the spliceosome, and mRNA processing. It is linked to cold acclimation, response to salt and abscisic acid, activation of salinity response, response to mannitol, and the transition from vegetative to reproductive phase. Associations include embryo development ending in seed dormancy, flowering time, starch grain synthesis, and traits related to sucrose and lipid content. The protein localises to the nucleus, cytosol, cytoplasm, nucleolus, chloroplast stroma, endoplasmic reticulum, mitochondria, and plasmalemma. Related genes in other species link the cyclophilin family to pre-mRNA splicing fidelity and immunity.
Annotations
- Chromosome
- 6
- Related genes
- CYCLOPHILIN, PCKR1, Cyp1, BRR2, F9C22.6, DCS3
- GO terms
- plasmalemma, transition from vegetative to reproductive phase, Cytosol, Nucleus, Cytoplasm, Regulation Of Protein Refolding, Cyclosporin A Binding, Cold Acclimation
- Publications
- 28534607, 32265287, 32345744, 18836138, 36636802, PMID:25819795, 15773857, 8264525
- Traits
- pre-mRNA splicing fidelity, splicing fidelity, immunity, Diminished GFP Fluorescence, Decreased Translation, Late Flowering Phenotype, Embryo Arrest at Transition Stage, Altered Suspensor, Pale Seeds, Late Flowering, Otherwise Normal Growth and Reproduction, Embryo Lethal, Developmental Arrest, Altered Suspensor