DMS2 — Brassica oleracea var. botrytis

Summary

BoDMS2 (BOLND125_C05P052140.1_BOLND125_V1) on cauliflower chromosome 5 encodes a DNA-directed RNA polymerase subunit beta, containing RNA polymerase Rpb2 and DNA-directed RNA polymerase subunit 2 domains, with DNA-directed RNA polymerase activity, chromatin binding, and ATP-dependent chromatin remodeler activity. The gene is associated with RNA-directed DNA methylation (RdDM), siRNA processing, posttranscriptional gene silencing, heterochromatin organization, and epigenetic regulation of gene expression. It localizes to RNA polymerase IV and V complexes, heterochromatin, and nuclear bodies. BoDMS2 is associated with Meloidogyne incognita resistance, disease tolerance, leaf senescence, seed viability, root morphology, and salt tolerance. It is also linked to heat tolerance, transposon suppression, and DNA methylation. Related genes in other species are linked to transgenerational insect resistance, self-incompatibility, and Agrobacterium-mediated transformation efficiency.

Annotations

Chromosome
5
Related genes
DMS2, DTF1, DMS1, SDE4, MRC8.7, DMS3, DMS5, DRM3
GO terms
Nuclear Body, Heterochromatin, RNA Polymerase IV Transcription Regulator Complex, Positive Regulation Of Chromatin Binding, DNA Binding, Zn binding, Nucleus, Protein Homodimerization Activity
Publications
35858769, 34850679, 23313553, 21399627, 23512852, 19494814, 31274236, 32514141
Traits
retrotransposon silencing, susceptibility to Heterodera schachtii, susceptibility to Meloidogyne incognita, salt stress adaptation, salt stress-induced mutagenesis, seed size, other miscellaneous trait, Late Flowering in Short Day Conditions