CAF — Brachypodium distachyon

Summary

BdCAF (BRADI_1G77087V3) on Brachypodium distachyon chromosome 1 encodes a protein with RNase_III, Dicer_dimer_sf, PAZ_dom, dsRBD_dom, and DEAD/DEAH_box_helicase_dom domains, and exhibits ribonuclease III activity, RNA methyltransferase activity, helicase activity, miRNA binding, and DNA binding transcription factor activity. The gene is associated with pri-miRNA processing, siRNA processing, gene silencing by miRNA-directed mRNA cleavage, regulation of adaxial/abaxial pattern formation, regulation of seed maturation, suspensor development, and embryonic pattern specification. It localizes to the nuclear CBC, D body, nucleolus, and cytoplasm. BdCAF is linked to traits including leaf, floral organ, and inflorescence morphology, vegetative vigor, root development, photosynthetic rate, osmotic response sensitivity, low-temperature stress response, and viral disease response. Related genes in other species connect the family to microRNA biogenesis, embryo development, and disease resistance.

Annotations

Chromosome
1
Related genes
CAF, DRB2, CRM2, DDL, DRB1, NOT2a, SE, DRB5
GO terms
RNA Splicing, Leaf Development, Regulation Of Alternative MRNA Splicing, Via Spliceosome, DNA Integration, RNA Processing, Flower Development, Helicase Activity, Ribonuclease III Activity
Publications
12857820, 17164336, 19221817, 21295131, 19953107, 21378120, 24731939, 24018204
Traits
cadmium tolerance, microRNA biogenesis, plant growth and development, miRNA metabolism, miRNA processing, embryo development, root development, leaf morphology